PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025307001
Common NameVIT_06s0004g01800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 536aa    MW: 59538.5 Da    PI: 6.5167
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025307001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-12167224155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  rk  + g ++ +e+Aa+a++ a++k++g
  GSVIVT01025307001 167 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqSRKGRQAGGYDKEEKAARAYDLAALKYWG 224
                        57*******************5555444555*************************98 PP

2AP247.15.8e-15269318355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  GSVIVT01025307001 269 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 318
                        9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-9167224IPR001471AP2/ERF domain
CDDcd000188.95E-19167234No hitNo description
SuperFamilySSF541717.19E-15167234IPR016177DNA-binding domain
SMARTSM003804.3E-22168238IPR001471AP2/ERF domain
PROSITE profilePS5103217.253168232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-12168233IPR001471AP2/ERF domain
PRINTSPR003673.5E-6169180IPR001471AP2/ERF domain
CDDcd000182.38E-24267326No hitNo description
SuperFamilySSF541716.21E-18267327IPR016177DNA-binding domain
SMARTSM003801.6E-32268332IPR001471AP2/ERF domain
PROSITE profilePS5103219.375268326IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-18268326IPR001471AP2/ERF domain
PfamPF008471.4E-9269318IPR001471AP2/ERF domain
PRINTSPR003673.5E-6308328IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MNSNNWLSFP LSPTHSSLPL NLHASQAQQF SLGLVNDNME SPFQNQEWNL INSHGSSEVP  60
KIADFLGVSK SENQADLEAF NEIQANDSDY FFPNNSLLPV PNPVAAAAVV ASPNSYEFQE  120
NNNNLQSLTL SMGSGKGSTC ETSGNSSTSI VEAAPRRTLD TFGQRTSIYR GVTRHRWTGR  180
YEAHLWDNSC RREGQSRKGR QAGGYDKEEK AARAYDLAAL KYWGTSTTTN FPISNYEREL  240
EEMKHMTRQE FVASIRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS  300
TEEEAAEAYD IAAIKFRGLN AVTNFDMNRY DVKSILESNT LPIGGGAAKR LKEAQAIESS  360
RKREEMIALG SSFQYGSSSS SRLQTYPLMQ QQFEQPQPLL TLQNQEPLLT LQNPEISQYP  420
QDSQFHQNYI QTQLQLHQQS GSYLNHSSQS PQFYNSYLHN NPALLHGLMS MGSSSSVMEN  480
NGSSSGSYNG GYFNNGLGEL PLIKVDYDMP AAGYGSWSGD SVQGQNAGVF TMWND*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4695140.0AM469514.1 Vitis vinifera contig VV78X026474.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285539.20.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ5YGP70.0PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLF6GU860.0F6GU86_VITVI; Putative uncharacterized protein
STRINGVIT_06s0004g01800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.10.0AP2 family protein